There is not a batch routine provided for FLAASH, so I guess if you needed to write code to perform a FLAASH correction, you would have to code that yourself from the beginning. That would be very complicated. I'm afraid that I can't help you with that. Here are some references that describe what FLAASH is doing, which might at least help you get started:
Adler-Golden, S. M., M. W. Matthew, L. S. Bernstein, R. Y. Levine, A. Berk, S. C. Richtsmeier, P. K. Acharya, G. P. Anderson, G. Felde, J. Gardner, M. Hoke, L. S. Jeong, B. Pukall, A. Ratkowski, and H.-H Burke, 1999. Atmospheric Correction for Short-wave Spectral Imagery Based on MODTRAN4. SPIE Proceedings on Imaging Spectrometry, Vol. 3753, pp. 61-69.
Berk, A., L. S. Bernstein, G. P. Anderson, P. K. Acharya, D. C. Robertson, J.H. Chetwynd, and S. M. Adler-Golden, 1998. MODTRAN Cloud and Multiple Scattering Upgrades with Application to AVIRIS. Remote Sensing of the Environment, Vol. 65, pp. 367-375.
Berk A., L. S. Bernstein, and D. C. Robertson, 1989. MODTRAN: a moderate resolution model for LOWTRAN7. GL-TR-89-0122. Air Force Geophysical Laboratory, Hanscom AFB, MA. p. 38.
Matthew, M. W., S. M. Adler-Golden, A. Berk, S. C. Richtsmeier, R. Y. Levine, L. S. Bernstein, P. K. Acharya, G. P. Anderson, G. W. Felde, M. P. Hoke, A. Ratkowski, H.-H. Burke, R. D. Kaiser, and D. P. Miller, 2000. Status of Atmospheric Correction Using a MODTRAN4-based Algorithm. SPIE Proceedings, Algorithms for Multispectral, Hyperspectral, and Ultraspectral Imagery VI. Vol. 4049, pp. 199-207.
Sorry I don't have better news or suggestions for you.
Peg
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