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Hi, Thank you for your reply. Below is template.txt;
;
;ENVI FLAASH PARAMETERS TEMPLATE (5.5.2)
;Written Thu Nov 14 13:03:35 2019
;
; Project Parameters
enviacc.prj.radiance_file = E:\Fire Alberta\richardson\2015\radio_20150526.dat
enviacc.prj.reflect_file = E:\Fire Alberta\richardson\check
enviacc.prj.filter_func_file = C:\Program Files\Harris\ENVI55\classic\filt_func\landsat8_oli.sli
enviacc.prj.filter_func_file_index = 0
enviacc.prj.water_band_choice = 1.13
enviacc.prj.red_channel = 4
enviacc.prj.green_channel = 3
enviacc.prj.blue_channel = 1
enviacc.prj.water_abs_channel = 0
enviacc.prj.water_ref_channel = 0
enviacc.prj.kt_upper_channel = 7
enviacc.prj.kt_lower_channel = 4
enviacc.prj.kt_cutoff = 0.0800
enviacc.prj.kt_ratio = 0.5000
enviacc.prj.cirrus_channel = 0
enviacc.prj.water_retrieval = 0
enviacc.prj.modtran_directory = E:\Fire Alberta\richardson\
;
; MODTRAN Parameters
enviacc.modtran.visvalue = 40.0000
enviacc.modtran.f_resolution = 15.0000
enviacc.modtran.day = 26
enviacc.modtran.month = 5
enviacc.modtran.year = 2015
enviacc.modtran.gmt = 18.4531
enviacc.modtran.latitude = 57.3048
enviacc.modtran.longitude = -110.9936
enviacc.modtran.sensor_altitude = 705.0000
enviacc.modtran.ground_elevation = 0.2600
enviacc.modtran.view_zenith_angle = 180.0000
enviacc.modtran.view_azimuth = 0.0000
enviacc.modtran.atmosphere_model = 3
enviacc.modtran.aerosol_model = 1
enviacc.modtran.multiscatter_model = 2
enviacc.modtran.disort_streams = 8
enviacc.modtran.co2mix = 390.0000
enviacc.modtran.water_column_multiplier = 1.0000
;
; Image Parameters
enviacc.img.nspatial = 8061
enviacc.img.nlines = 8141
enviacc.img.data_type = 4
enviacc.img.margin1 = 0
enviacc.img.margin2 = 0
enviacc.img.nskip = 0
enviacc.img.pixel_size = 30.0000
enviacc.img.sensor_name = Landsat-8 OLI
;
; Analysis Parameters
enviacc.ana.aerosol_scaleht = 1.5000
enviacc.ana.use_adjacency = 1
enviacc.ana.output_scale = 10000.0000
enviacc.ana.output_diagnostic_files = 0
enviacc.ana.auto_save_template = 1
enviacc.ana.polishing_res = 0
enviacc.ana.aerosol_retrieval = 1
enviacc.ana.calc_wl_correction = 0
enviacc.ana.reuse_modtran_calcs = 0
enviacc.ana.use_square_slit_function = 0
enviacc.ana.convolution_method = fft
enviacc.ana.use_tiling = 1
enviacc.ana.tile_size = 2048.0000
;
; GParameters Parameters
enviacc.gparameters.gfact = 0
enviacc.gparameters.gval = 0.0000
enviacc.gparameters.use_lr_method = 0
enviacc.gparameters.multikernel = 1
enviacc.gparameters.autoroi = auto
enviacc.gparameters.selarg = a
;
; Spectral Parameters
enviacc.spc.wavelength_units = micron
enviacc.spc.lambda = [
0.4430, 0.4826, 0.5613, 0.6546, 0.8646, 1.6090, 2.2010]
enviacc.spc.fwhm = [
0.016000, 0.060100, 0.057400, 0.037500, 0.028200, 0.084700, 0.186700]
enviacc.img.p_input_scale = [
1.0000, 1.0000, 1.0000, 1.0000, 1.0000, 1.0000, 1.0000]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I am not sure how much for the journal you need, so I am including entire Journal.txt below;
*****************FLAASH-SLANT****************
Spectral Sciences Atmospheric Correction Code
1998-2008
Version 01302013
** See Instructions for Use **
************* MAIN MENU ***************
Commands:
m = set up MODTRAN input file
r = Run MODTRAN
h = Hyperspectral data analysis
a = About FLAASH (Instructions)
c = Convert existing MODTRAN tape7
w = Read Warfighter run file, create initial tape5
q = Quit
script command h
Path for output files (except output reflectance cube) is E:\Fire Alberta\richardson\
Enter u = Use this path or a = select Another path :
script command u
************ DATA ANALYSIS MENU *************
Setup Commands:
S = I/O Setup, interactive
s = I/O Setup via serial queries
d = new radiance Data cube
a = Adjacency algorithm setup (create averaged image)
q = Quit to main menu
Processing Commands:
i = simulate radiance Image from reflectance
M = prepare MODTRAN run
R = run MODTRAN
WC = Channel Wavelength Correction
Utility Commands:
? = menu help
p = Plot pixel spectra
e = display Existing reflectance file
script command d
Reading header (if any) from image file E:\Fire Alberta\richardson\2015\radio_20150526.dat
Enter u = Use this file, a = select Another file (dialog),
or d = select another file (Direct filename entry) :
script command u
Select method for representing instrument spectral filter function.
Type 1 for calculated function, 2 for a function defined by a file, 3 for external channel definitions passed in.
...type 99 to accept default from call.
script command 99
************ DATA ANALYSIS MENU *************
Setup Commands:
S = I/O Setup, interactive
s = I/O Setup via serial queries
d = new radiance Data cube
l = Load and display radiance data cube
a = Adjacency algorithm setup (create averaged image)
q = Quit to main menu
Processing Commands:
i = simulate radiance Image from reflectance
v = aerosol Visibility determination
k = Kaufman (ratio) visibility retrieval
M = prepare MODTRAN run
R = run MODTRAN
WC = Channel Wavelength Correction
Utility Commands:
? = menu help
p = Plot pixel spectra
e = display Existing reflectance file
script command l
Channel definitions: type 1 to use passed-in default,
2 to select manually between automatic
and external-file channel definitions.
script command 1
Warning: vegetation parameters not found in channel selection file E:\Fire Alberta\richardson\channel_def.txt
Loading spectral data...
24000713 blank pixels out of 65624601 were found.
*Not displaying RGB radiance image, cirrus cloud image and last-line spectra
************ DATA ANALYSIS MENU *************
Setup Commands:
S = I/O Setup, interactive
s = I/O Setup via serial queries
d = new radiance Data cube
l = Load and display radiance data cube
a = Adjacency algorithm setup (create averaged image)
q = Quit to main menu
Processing Commands:
i = simulate radiance Image from reflectance
v = aerosol Visibility determination
k = Kaufman (ratio) visibility retrieval
c = Column water retrieval
MSc = User-specified Column water
M = prepare MODTRAN run
R = run MODTRAN
WC = Channel Wavelength Correction
Utility Commands:
? = menu help
p = Plot pixel spectra
e = display Existing reflectance file
script command M
Select option:
g = standard GUI interface
v = visibility setup
script command call
Estimated MODTRAN run time: 0.061488998 min
Estimated MODTRAN run time: 0.061372129 min
************ DATA ANALYSIS MENU *************
Setup Commands:
S = I/O Setup, interactive
s = I/O Setup via serial queries
d = new radiance Data cube
l = Load and display radiance data cube
a = Adjacency algorithm setup (create averaged image)
q = Quit to main menu
Processing Commands:
i = simulate radiance Image from reflectance
v = aerosol Visibility determination
k = Kaufman (ratio) visibility retrieval
c = Column water retrieval
MSc = User-specified Column water
M = prepare MODTRAN run
R = run MODTRAN
WC = Channel Wavelength Correction
Utility Commands:
? = menu help
p = Plot pixel spectra
e = display Existing reflectance file
script command R
Run MODTRAN using tape5 in current directory:
Are you sure? y=yes n=no
script command y
Converting tape7 to ACC archive (.fla) file for storage
Select archive filename
Opening archive file to write: E:\Fire Alberta\richardson\run0.fla
Enter u = Use this file, a = select Another file (dialog),
or d = select another file (Direct filename entry) :
script command u
No. of spectra= 1
No. of spectra= 2
No. of spectra= 3
No. of spectra= 4
No. of spectra= 5
No. of spectra= 6
No. of spectra= 7
No. of spectra= 8
No. of spectra= 9
No. of spectra= 10
No. of spectra= 11
No. of spectra= 12
No. of spectra= 13
No. of spectra= 14
No. of spectra= 15
No. of spectra= 16
No. of spectra= 17
No. of spectra= 18
No. of spectra= 19
No. of spectra= 20
No. of spectra= 21
No. of spectra= 22
No. of spectra= 23
No. of spectra= 24
No. of spectra= 25
No. of spectra= 26
No. of spectra= 27
Column water range= 0.764940 to 0.764940 g/cm2
( 951.723 to 951.723 atm-cm)
No. of frequencies= 5293
File archived
Use E:\Fire Alberta\richardson\run0.fla as current MODTRAN archive file?
0 = no
1 = use as altitude loop file
2 = use as water loop file
3 = use as aerosol loop file
script command 3
************ DATA ANALYSIS MENU *************
Setup Commands:
S = I/O Setup, interactive
s = I/O Setup via serial queries
d = new radiance Data cube
l = Load and display radiance data cube
a = Adjacency algorithm setup (create averaged image)
q = Quit to main menu
Processing Commands:
i = simulate radiance Image from reflectance
v = aerosol Visibility determination
k = Kaufman (ratio) visibility retrieval
c = Column water retrieval
MSc = User-specified Column water
M = prepare MODTRAN run
R = run MODTRAN
WC = Channel Wavelength Correction
Utility Commands:
? = menu help
p = Plot pixel spectra
e = display Existing reflectance file
script command a
Generating spatially smoothed image E:\Fire Alberta\richardson\smooth
Enter 1 to process radiance image E:\Fire Alberta\richardson\2015\radio_20150526.dat (for reflectance determination)
2 to process reflectance image E:\Fire Alberta\richardson\check (for radiance simulation)
script command 1.00000
Smoothing parameters passed in:
sensor altitude (Km)= 705.000
IFOV (millirad)= 0.0425532
aerosol scale height (Km)= 1.50000
Estimated 1/e scattering range= 0.440100 km
Loading data cube...
Generating smoothed image for adjacency correction...
Convolution kernel dimension is equivalent to 136 image pixels
ODScale= 0.0161956alpha= 0.0269926
Smoothing...
Writing output to file...
************ DATA ANALYSIS MENU *************
Setup Commands:
S = I/O Setup, interactive
s = I/O Setup via serial queries
d = new radiance Data cube
l = Load and display radiance data cube
a = Adjacency algorithm setup (create averaged image)
q = Quit to main menu
Processing Commands:
i = simulate radiance Image from reflectance
v = aerosol Visibility determination
k = Kaufman (ratio) visibility retrieval
c = Column water retrieval
MSc = User-specified Column water
M = prepare MODTRAN run
R = run MODTRAN
WC = Channel Wavelength Correction
Utility Commands:
? = menu help
p = Plot pixel spectra
e = display Existing reflectance file
script command k
Use adjacency correction? y = yes n = no
script command y
Pixel selection:
Enter s (select from list) or a (automatic):
script command a
Enter
1 to use existing Kaufman-Tanre channels 4- 4 and 7- 7
3 for manual entry of channels-switch to littoral for more than two bands selected
4 to use passed-in choice of visibility method: kaufman-tanre
script command 4
Read in MODTRAN calc. for long bandpass:
Reading archive file of previous MODTRAN calculation E:\Fire Alberta\richardson\run0.fla
(NOTE: this calculation must be appropriate for the current data cube)
u = Use this file
a = select Another existing file (dialog)
d = use Another existing file (Direct filename entry)
q = Return to the hyperspectral menu
m = Set up new MODTRAN calculation
script command u
Read in MODTRAN calc. for short bandpass:
Reading archive file of previous MODTRAN calculation E:\Fire Alberta\richardson\run0.fla
(NOTE: this calculation must be appropriate for the current data cube)
u = Use this file
a = select Another existing file (dialog)
d = use Another existing file (Direct filename entry)
q = Return to the hyperspectral menu
m = Set up new MODTRAN calculation
script command u
Loading image data...
Start image line loops
End image line loops; start retrieval
Number of pixels rejected by NIR/red ratio method: 4.68525e+007
Number of pixels rejected for negative long bandpass: 0.000000
nselect= 8.40907e+006 8.36478e+006 8.32039e+006 8.27612e+006 8.23321e+006
8.18575e+006 8.14005e+006 8.10802e+006 8.09354e+006
srhoav= -0.0648552 -0.0495503 -0.0354516 -0.0224929 -0.0106155
0.00186574 0.0133371 0.0237282 0.0322430
xreflav= -0.0923113 -0.0772668 -0.0634125 -0.0507012 -0.0390615
-0.0268478 -0.0156431 -0.00549766 0.00280125
altvect= 0.200000 0.175417 0.150833 0.126250 0.101667
0.0770833 0.0525000 0.0279167 0.00333333
vis= 5.00000 5.70071 6.62983 7.92079 9.83607
12.9730 19.0476 35.8209 300.000
lrhoav= 0.0549122 0.0554331 0.0559219 0.0564167 0.0568918
0.0574270 0.0579603 0.0584517 0.0588834
Constrained to nonnegative srhoav
Selected 8.40907e+006 8.36478e+006 8.32039e+006 8.27612e+006 8.23321e+006
8.18575e+006 8.14005e+006 8.10802e+006 8.09354e+006 pixels
Avge visibility= 85.9749
*Not displaying selected dark pixels on RGB radiance image
************ DATA ANALYSIS MENU *************
Setup Commands:
S = I/O Setup, interactive
s = I/O Setup via serial queries
d = new radiance Data cube
l = Load and display radiance data cube
a = Adjacency algorithm setup (create averaged image)
q = Quit to main menu
Processing Commands:
i = simulate radiance Image from reflectance
v = aerosol Visibility determination
k = Kaufman (ratio) visibility retrieval
c = Column water retrieval
MSc = User-specified Column water
M = prepare MODTRAN run
R = run MODTRAN
WC = Channel Wavelength Correction
Utility Commands:
? = menu help
p = Plot pixel spectra
e = display Existing reflectance file
script command M
Select option:
g = standard GUI interface
v = visibility setup
script command call
Estimated MODTRAN run time: 0.0075898320 min
Estimated MODTRAN run time: 0.0074234596 min
************ DATA ANALYSIS MENU *************
Setup Commands:
S = I/O Setup, interactive
s = I/O Setup via serial queries
d = new radiance Data cube
l = Load and display radiance data cube
a = Adjacency algorithm setup (create averaged image)
q = Quit to main menu
Processing Commands:
i = simulate radiance Image from reflectance
v = aerosol Visibility determination
k = Kaufman (ratio) visibility retrieval
c = Column water retrieval
MSc = User-specified Column water
M = prepare MODTRAN run
R = run MODTRAN
WC = Channel Wavelength Correction
Utility Commands:
? = menu help
p = Plot pixel spectra
e = display Existing reflectance file
script command R
Run MODTRAN using tape5 in current directory:
Are you sure? y=yes n=no
script command y
Converting tape7 to ACC archive (.fla) file for storage
Select archive filename
Opening archive file to write: E:\Fire Alberta\richardson\acc_modroot.fla
Enter u = Use this file, a = select Another file (dialog),
or d = select another file (Direct filename entry) :
script command u
No. of spectra= 1
No. of spectra= 2
No. of spectra= 3
No. of spectra= 4
No. of spectra= 5
No. of spectra= 6
No. of spectra= 7
No. of spectra= 8
No. of spectra= 9
Column water range= 0.688446 to 0.841434 g/cm2
( 856.551 to 1046.90 atm-cm)
No. of frequencies= 1765
File archived
Use E:\Fire Alberta\richardson\acc_modroot.fla as current MODTRAN archive file?
0 = no
1 = use as altitude loop file
2 = use as water loop file
3 = use as aerosol loop file
script command 2
************ DATA ANALYSIS MENU *************
Setup Commands:
S = I/O Setup, interactive
s = I/O Setup via serial queries
d = new radiance Data cube
l = Load and display radiance data cube
a = Adjacency algorithm setup (create averaged image)
q = Quit to main menu
Processing Commands:
i = simulate radiance Image from reflectance
v = aerosol Visibility determination
k = Kaufman (ratio) visibility retrieval
c = Column water retrieval
MSc = User-specified Column water
M = prepare MODTRAN run
R = run MODTRAN
WC = Channel Wavelength Correction
Utility Commands:
? = menu help
p = Plot pixel spectra
e = display Existing reflectance file
script command MSc
Reading archive file of previous MODTRAN calculation E:\Fire Alberta\richardson\acc_modroot.fla
(NOTE: this calculation must be appropriate for the current data cube)
u = Use this file
a = select Another existing file (dialog)
d = use Another existing file (Direct filename entry)
q = Return to the hyperspectral menu
m = Set up new MODTRAN calculation
script command u
Calculating doverb
*Not displaying surface image of look-up table
Too few channels to plot calculated MODTRAN spectra
Completed processing MS MODTRAN calculations
Center water column value from MODTRAN is 0.764940 gm/cm2
Type y to use this, n to enter a value
script command y
Writing illumination functions to E:\Fire Alberta\richardson\illumination_functions.sli
Writing illumination functions to E:\Fire Alberta\richardson\illumination_functions.txt
************ DATA ANALYSIS MENU *************
Setup Commands:
S = I/O Setup, interactive
s = I/O Setup via serial queries
d = new radiance Data cube
l = Load and display radiance data cube
a = Adjacency algorithm setup (create averaged image)
q = Quit to main menu
Processing Commands:
i = simulate radiance Image from reflectance
v = aerosol Visibility determination
k = Kaufman (ratio) visibility retrieval
c = Column water retrieval
MSc = User-specified Column water
r = Reflectance determination
M = prepare MODTRAN run
R = run MODTRAN
WC = Channel Wavelength Correction
Utility Commands:
? = menu help
p = Plot pixel spectra
e = display Existing reflectance file
script command r
Use adjacency correction? y = yes n = no
script command y
The output resolution sets the number of wavelength channels over
which spectral polishing will be carried out. Values less than 2
give no polishing. Present value is 2
Please enter an integer for output resolution, or for present value.
Polishing resolution passed in=
Spectral polishing will not be used for resolution= 0
ACC error...
IDL error: -144
Attempt to subscript VALUE with UAV is out of range.
in context: adjacent5:
calls:
ACC_ADJACENT5 <( 9)> ACC_HYPER2 <( 645)> ACC_ACC <( 191)>
ENVI_ACC_EVENT <(3184)> ENVI_FLAASH_PROCESS_MANAGER <( 274)> IDLRTMAIN <( 172)>
$MAIN$ <( 0)>
filter function band centers: 0.442491 0.482764 0.560859
0.654205 0.863971 1.60908 2.20153
input image band centers: 0.443000 0.482600 0.561300 0.654600
0.864600 1.60900 2.20100
filter function bands used: 0 1 2 3 4 5
6
Thank you
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